Add CLAUDE.md project guide and worktree documentation
CLAUDE.md gives Claude Code instant context on architecture, commands, conventions, security-critical modules, and public API surface. docs/CLAUDE_WORKTREES.md is a beginner-friendly guide to using Claude Code with git worktrees for isolated feature work. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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docs/CLAUDE_WORKTREES.md
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# Using Claude Code with Git Worktrees — A Stegasoo Guide
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## What is a worktree?
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A git worktree is a second (or third, or fourth...) copy of your repo that shares the same `.git` history but lives in its own folder with its own branch. Think of it like opening the same project in a parallel universe — you can hack on a feature in one worktree while keeping `main` pristine in another.
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Claude Code has built-in worktree support, so you don't need to memorize any git commands.
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## Why bother?
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- **Safety net**: Your `main` branch stays untouched. If Claude's changes go sideways, just delete the worktree — zero damage.
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- **Easy A/B comparison**: Keep the original code open in one editor tab, Claude's changes in another.
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- **Parallel work**: You can keep working in `main` while Claude tinkers in a worktree.
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- **Clean PRs**: The worktree branch becomes your PR branch with no stray changes mixed in.
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## The 30-second version
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1. Ask Claude to work in a worktree
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2. Claude creates an isolated copy and works there
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3. When done, you either merge or throw it away
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That's it. Everything below is details.
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---
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## How to start a worktree session
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### Option A: Ask Claude directly
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Just tell Claude you want to work in a worktree:
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```
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> Let's work in a worktree for this
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> Start a worktree called "dct-refactor"
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> Can you make these changes in an isolated worktree?
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```
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Claude will use `EnterWorktree` behind the scenes and switch into it automatically.
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### Option B: Use the slash command
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```
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> /worktree
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```
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This drops you into a fresh worktree immediately.
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### Option C: Tell Claude to launch an agent in a worktree
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If you want Claude to do something in the background without touching your working directory:
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```
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> Run the tests in a worktree so we don't mess up my local state
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```
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Claude can spin up a sub-agent with `isolation: "worktree"` — it gets its own copy and reports back.
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---
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## Where do worktrees live?
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Claude puts them in:
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```
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.claude/worktrees/<name>/
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```
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This directory is inside your repo but ignored by git, so it won't pollute your commits.
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## What happens inside a worktree?
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The worktree is a full checkout of your repo on a new branch. Claude's working directory switches to it, so all file reads, edits, and commands happen there — not in your main checkout.
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**Important for Stegasoo**: The first thing you (or Claude) should do in a fresh worktree is:
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```bash
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pip install -e ".[dev]"
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```
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This points your editable install at the worktree's source code instead of your main checkout. Without this, `pytest` will test the wrong copy of the code.
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---
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## Real-world examples
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### Example 1: Feature work
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```
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You: I want to add lz4 as a default compression option. Let's use a worktree.
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Claude: *creates worktree, switches to it*
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Claude: *installs dev deps, makes changes, runs tests*
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Claude: All tests pass. Ready to merge or open a PR.
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You: Looks good, make a PR.
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Claude: *pushes branch, creates PR*
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```
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### Example 2: Risky refactor
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```
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You: Refactor the crypto module to split KDF logic into its own file.
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Do it in a worktree so I can review before touching main.
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Claude: *creates worktree "refactor/split-kdf"*
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Claude: *does the refactor, runs tests*
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You: Hmm, I don't love the approach. Throw it away.
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Claude: *removes worktree — main is untouched*
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```
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### Example 3: Investigate a bug without side effects
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```
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You: Something's wrong with DCT encoding on large images.
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Can you investigate in a worktree? I've got uncommitted work here.
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Claude: *creates worktree, adds debug logging, runs tests*
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Claude: Found it — the block size calculation overflows at >16MP.
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Here's the fix. Want me to apply it to main?
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```
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---
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## When to use a worktree vs. just editing in place
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| Situation | Worktree? | Why |
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|-----------|-----------|-----|
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| Quick one-file fix | No | Overkill — just edit directly |
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| Multi-file refactor | Yes | Easy to discard if it goes wrong |
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| Touching security-critical code (`crypto.py`, `steganography.py`, etc.) | Yes | Extra safety for sensitive changes |
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| Experimental / "let's try this" work | Yes | Zero-cost throwaway |
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| You have uncommitted changes you don't want to stash | Yes | Worktree won't touch your working tree |
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| Adding a single test | No | Low risk, just do it |
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---
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## Cleaning up
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### If you merged or created a PR
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The worktree served its purpose. Clean up:
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```bash
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git worktree remove .claude/worktrees/<name>
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```
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Or ask Claude:
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```
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> Clean up the worktree
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```
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### If you want to throw everything away
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Same command — removing the worktree deletes the directory and its branch reference. Your `main` branch is completely unaffected.
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### If Claude's session ends
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When a Claude Code session ends while in a worktree, you'll be prompted to keep or remove it. If you keep it, you can resume later:
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```bash
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cd .claude/worktrees/<name>
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# pick up where you left off
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```
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---
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## Branch naming in worktrees
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Follow the same conventions as the rest of the project:
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| Type | Branch name | Example |
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|------|-------------|---------|
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| Feature | `feature/description` | `feature/batch-progress-bars` |
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| Bug fix | `fix/description` | `fix/dct-overflow-large-images` |
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| Docs | `docs/description` | `docs/api-examples` |
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| Refactor | `refactor/description` | `refactor/split-crypto-module` |
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When Claude creates a worktree automatically, it generates a random branch name. You can rename it before pushing:
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```bash
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git branch -m <old-name> feature/my-better-name
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```
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---
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## Troubleshooting
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### "I ran pytest but it's testing the old code"
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You forgot to install in the worktree:
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```bash
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pip install -e ".[dev]"
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```
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### "I can't find my worktree"
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```bash
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git worktree list
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```
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This shows all worktrees and their paths.
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### "I accidentally deleted the worktree folder without removing it from git"
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```bash
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git worktree prune
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```
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This cleans up stale worktree references.
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### "I want to switch back to my main checkout"
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If you're in a Claude Code session that entered a worktree, the session stays in the worktree until it ends. Start a new session to go back to your main checkout, or:
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```bash
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cd /home/alee/Sources/stegasoo
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```
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---
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## TL;DR
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1. Say "use a worktree" when asking Claude to make changes
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2. Claude works in an isolated copy — your `main` is safe
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3. Merge the good stuff, trash the bad stuff
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4. Never think about it again until next time
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